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Case study: the true finches2 years ago
1. Getting species names within the family Fringillidae | 2. Search the species names across a chronogram database | 3. Summarizing a datelifeResult object | 3.1 Source chronograms: | To see how different datelife queries are made, check out the next tutorial vignette: Making a datelife query.
Getting started2 years ago
What can you get with datelife? | How do you use datelife to get these data? | 1. Processing your organism names | a) From a set of organism taxonomic names | b) From a tree with organism taxonomic names as tip labels | 2. Searching the chronogram database | 3. Summarizing chronogram search results | Citations | MRCA ages | Newick strings | phylo objects | Summary tables | To see an application of these functions in a case study, check out the next tutorial vignette: Case Study: the true finches.
Making a DateLife query2 years ago
When input is list or vector of taxon names | When input names are not found in the taxonomy | Subspecies can also be searched | Choosing between homonyms | Making a query from an inclusive taxonomic group | The function get_opentree_species() | To see how trees with branch lengths estimated from BOLD (Barcode Of Life Database) data can be made with a datelife workflow, check out the next tutorial vignette: Estimating Branch Lengths.
Estimating initial branch lengths4 years ago
Using OpenTree topology:
Introduction to the phylocomr package4 years ago
Install | phylomatic | aot | bladj